Tag Buchfink11
Specialization for ReducedAminoAcid#

Defined in seqan/reduced_aminoacid.h
Signature typedef Buchfink11 Tag<Buchfink11_>;

Detailed Description

This is the 11-character reduction defined by Buchfink et al, 2014, https://www.ncbi.nlm.nih.gov/pubmed/25402007

This alphabet is used by tool Diamond.

Since it was created from the 20-letter alphabet the clusters in SeqAn are not identical (they contain more symbols). This is the clustering:

'A', // A S T X
  'B', // B D E K N O Q R Z
  'C', // C U
  'F', // F *
  'G', // G
  'H', // H
  'I', // I J L V
  'M', // M
  'P', // P
  'W', // W
  'Y'  // Y