RNAlib-2.5.0
Incorporating Ligands Binding to Specific Sequence/Structure Motifs using Soft Constraints

Detailed Description

+ Collaboration diagram for Incorporating Ligands Binding to Specific Sequence/Structure Motifs using Soft Constraints:

Functions

int vrna_sc_add_hi_motif (vrna_fold_compound_t *vc, const char *seq, const char *structure, FLT_OR_DBL energy, unsigned int options)
 Add soft constraints for hairpin or interior loop binding motif. More...
 

Function Documentation

◆ vrna_sc_add_hi_motif()

int vrna_sc_add_hi_motif ( vrna_fold_compound_t vc,
const char *  seq,
const char *  structure,
FLT_OR_DBL  energy,
unsigned int  options 
)

#include <ViennaRNA/constraints/ligand.h>

Add soft constraints for hairpin or interior loop binding motif.

Parameters
vcThe vrna_fold_compound_t the motif is applied to
seqThe sequence motif (may be interspaced by '&' character
structureThe structure motif (may be interspaced by '&' character
energyThe free energy of the motif (e.g. binding free energy)
optionsOptions
Returns
non-zero value if application of the motif using soft constraints was successful
SWIG Wrapper Notes:
This function is attached as method sc_add_hi_motif() to objects of type fold_compound