, including all inherited members.
| EigenDecomposition(int decompositionCount, int stateCount, int categoryCount, long flags) (defined in beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC >) | beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC > | [inline] |
| EigenDecompositionCube(int decompositionCount, int stateCount, int categoryCount, long flags) (defined in beagle::cpu::EigenDecompositionCube) | beagle::cpu::EigenDecompositionCube | |
| firstDerivTmp (defined in beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC >) | beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC > | [protected] |
| gCMatrices (defined in beagle::cpu::EigenDecompositionCube) | beagle::cpu::EigenDecompositionCube | [protected] |
| gEigenValues (defined in beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC >) | beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC > | [protected] |
| kCategoryCount (defined in beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC >) | beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC > | [protected] |
| kEigenDecompCount (defined in beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC >) | beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC > | [protected] |
| kFlags (defined in beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC >) | beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC > | [protected] |
| kStateCount (defined in beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC >) | beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC > | [protected] |
| matrixTmp (defined in beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC >) | beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC > | [protected] |
| secondDerivTmp (defined in beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC >) | beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC > | [protected] |
| setEigenDecomposition(int eigenIndex, const double *inEigenVectors, const double *inInverseEigenVectors, const double *inEigenValues) (defined in beagle::cpu::EigenDecompositionCube) | beagle::cpu::EigenDecompositionCube | [virtual] |
| updateTransitionMatrices(int eigenIndex, const int *probabilityIndices, const int *firstDerivativeIndices, const int *secondDerivativeIndices, const double *edgeLengths, const double *categoryRates, REALTYPE **transitionMatrices, int count) (defined in beagle::cpu::EigenDecompositionCube) | beagle::cpu::EigenDecompositionCube | [virtual] |
| ~EigenDecomposition() (defined in beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC >) | beagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC > | [inline, virtual] |
| ~EigenDecompositionCube() (defined in beagle::cpu::EigenDecompositionCube) | beagle::cpu::EigenDecompositionCube | [virtual] |
