Human (Homo sapiens, GRCh37) and Gibbon (Nomascus leucogenys, Nleu1.0) were aligned using the LastZ alignment algorithm (LastZ) in Ensembl release 62. Human was used as the reference species. After running LastZ , the raw LastZ alignment blocks are chained according to their location in both genomes. During the final netting process, the best sub-chain is chosen in each region on the reference species.
Full list of pairwise alignmentsGap open penalty (O) | 400 | ||||||||||||||||||||
Gap extend penalty (E) | 30 | ||||||||||||||||||||
HSP threshold (K) | 5000 | ||||||||||||||||||||
Threshold for gapped extension (L) | 5000 | ||||||||||||||||||||
Threshold for alignments between gapped alignment blocks (H) | 3000 | ||||||||||||||||||||
Masking count (M) | 50 | ||||||||||||||||||||
Seed and Transition value (T) | 1 | ||||||||||||||||||||
Scoring matrix (Q) |
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Number of alignment blocks: 1195617
Genome coverage(bp) | Coding exon coverage (bp) | |
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Human | ![]() |
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1,961,410,814 out of 3,098,825,702 | 33,806,710 out of 35,483,623 | |
Gibbon | ![]() |
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1,894,930,699 out of 2,936,035,333 | 29,565,294 out of 29,936,644 |