Pig vs Cow BlastZ alignments

Pig (Sus scrofa, Sscrofa9) and Cow(Bos taurus, Btau_4.0) were aligned using the BlastZ alignment algorithm (Schwartz S et al., Genome Res.;13(1):103-7, Kent WJ et al., Proc Natl Acad Sci U S A., 2003;100(20):11484-9) in Ensembl release 57. Pig was used as the reference species. After running BlastZ, the raw BlastZ alignment blocks are chained according to their location in both genomes. During the final netting process, the best sub-chain is chosen in each region on the reference species.

Full list of pairwise alignments

Configuration parameters

No configuration parameters are available

Results

Number of alignment blocks: 2507639

Genome coverage(bp) Coding exon coverage (bp)
Pig
647,129,795 out of 2,262,596,414 22,848,389 out of 24,439,764
Cow
576,352,863 out of 2,918,205,644 22,761,353 out of 32,548,771